Hotels in Nagasaki Prefecture

Search and compare Nagasaki Prefecture hotels from hundreds of travel sites on HotelsCombined and save.

...and more

Learn why travellers love HotelsCombined

Compare hotel ratings collected from thousands of user reviews.

One search gives you accurate pricing on affordable hotels.

Customie your results by hotel chain, amenities, price and more.

Search for hotels as many times as you want – for free.

Refine Your Search

Star ratings
Guest Ratings
Amenities
Freebies
See all filters

Popular hotels in Nagasaki Prefecture

Discover well-known properties in Nagasaki Prefecture that are favoured by visitors more than others. There are 930 hotels in Nagasaki Prefecture and price data was last updated on 6 December 2025. The average price for a hotel in Nagasaki Prefecture is €102/night.
Enter your travel dates to find the best prices.
Filter by star ratings
All filters
1453 Kokubu Izuharamachi, Tsushima, Japan
Quietly consider yourself through the morning Zazen meditation and the scenery in the gardens. Heal your body on an island rich in nature, surrounded by the azure sea and vivid green mountains.
Free Wi-Fi
9.0
Excellent
282 reviews
Location
0.6 km from city centre
Dozamachi 3-12, Nagasaki, Japan
Hotel with a full-service spa, steps from Nagasaki Dejima A full-service spa, a 24-hour front desk, and free WiFi in public areas are available at this smoke-free hotel. Other amenities include a vending machine. Candeo Hotels Nagasaki Shinchi Chinatown offers 207 accommodations with slippers and hair dryers. Flat-screen televisions are featured in guestrooms. Bathrooms include shower/tub combinations, bidets, toilets with an electronic bidet, and complimentary toiletries. This Nagasaki hotel provides complimentary wireless Internet access. Housekeeping is provided daily.
Free Wi-Fi
Spa
8.7
Excellent
3529 reviews
Location
6.2 km from city centre
510 Udogoe Chou, Sasebo, Japan
Resort hotel situation in the Saikai national park - Free Onsen hot spring for guests!! Panoramic views of Kujuuku islands! Free parking lot - Regular service of free shuttle bus from JR Sasebo station.
Free Wi-Fi
Parking
8.7
Excellent
366 reviews
Location
2.2 km from city centre
12-7 Shiomi-cho, Sasebo, Japan
Hotel in Sasebo with 2 restaurants and a 24-hour front desk This hotel features 2 restaurants, self parking, and a microwave in a common area. WiFi in public areas is free. Additionally, dry cleaning, laundry facilities, and a 24-hour front desk are onsite. Housekeeping is available once per stay. Sasebo Washington Hotel offers 190 air-conditioned accommodations with bathrobes and slippers. Beds feature down comforters. Flat-screen televisions are featured in guestrooms. Bathrooms include shower/tub combinations with deep soaking bathtubs, bidets, complimentary toiletries, and hair dryers. Business-friendly amenities include desks and phones. Housekeeping is provided once per stay.
Free Wi-Fi
7.7
Good
1532 reviews
Location
4.0 km from city centre
Hama 4-11 Hamacross411 4F, Nagasaki, Japan
Hotel in Nagasaki with a 24-hour front desk and a restaurant Along with a restaurant, this smoke-free hotel has coffee/tea in a common area and dry cleaning. WiFi in public areas is free. Additionally, laundry facilities, a 24-hour front desk, and a computer station are onsite. Hotel Forza Nagasaki offers 175 air-conditioned accommodations with washers/dryers and safes. Guests can make use of the in-room refrigerators and coffee/tea makers. Bathrooms include showers, slippers, bidets, and complimentary toiletries. Guests can surf the web using the complimentary wired and wireless Internet access. 40-inch flat-screen televisions come with pay movies. Housekeeping is offered daily and irons/ironing boards can be requested.
Free Wi-Fi
8.6
Excellent
4247 reviews
Location
6.3 km from city centre
5-24 Minato-machi, Sasebo, Japan
Hotel in Sasebo with a 24-hour front desk and a restaurant Along with a restaurant, this hotel has self parking and concierge services. WiFi in public areas is free. Additionally, dry cleaning, laundry facilities, and a 24-hour front desk are onsite. Quintessa Hotel Sasebo offers 162 accommodations with coffee/tea makers and slippers. LCD televisions come with pay movies. Bathrooms include shower/tub combinations with deep soaking bathtubs, bidets, complimentary toiletries, and hair dryers. This Sasebo hotel provides complimentary wired and wireless Internet access. Business-friendly amenities include desks and phones. Housekeeping is offered daily and in-room massages can be requested.
Free Wi-Fi
8.0
Excellent
932 reviews
Location
2.6 km from city centre
8-17 Shirahae-cho, Sasebo, Japan
Superbly convenient location! Just a minute's walk from the first floor of the hotel is the terminal from which buses leave for Fukuoka, Fukuoka Airport, Nagasaki, and Nagasaki Airport! Plus only a minute's walk from JR Sasebo Station! The perfect hub for exploring Huis Ten Bosch, Saikai Pearl Sea Resort, and Hirado!
Free Wi-Fi
Airport shuttle
7.7
Good
2278 reviews
Location
3.9 km from city centre
6 Huis Ten Bosch, Sasebo, Japan
Refresh your body in our Grand Bath and wash away weariness of the journey. At the Western and Japanese restaurants a special dinner for our 15th anniversary available. We also offer an accommodation plan for groups of 4 to 6 persons in which we ensure rooms next to each other or in front of the other. 3 minutes walk to the entrance of Huis Ten Bosch!
Free Wi-Fi
8.5
Excellent
2684 reviews
Location
13.9 km from city centre
1-15 Motoshima-Cho, Sasebo, Japan
Hotel in Sasebo with a 24-hour front desk and a restaurant A restaurant, self parking, and laundry facilities are available at this hotel. WiFi in public areas is free. Additionally, a 24-hour front desk, a front-desk safe, and a banquet hall are onsite. Sunwest Hotel Sasebo offers 106 air-conditioned accommodations with slippers and hair dryers. LED televisions come with digital channels and pay movies. Bathrooms include showers, toilets with an electronic bidet, and complimentary toiletries. This Sasebo hotel provides complimentary wired and wireless Internet access. Business-friendly amenities include desks and phones. Housekeeping is provided daily.
8.5
Excellent
250 reviews
Location
3.0 km from city centre
771-1 Imayashiki, Izuhara-Machi, Tsushima, Japan
Hotel with free breakfast, 3-minute walk to Tsushima City Office Along with self parking, this smoke-free hotel has a microwave in a common area and a business center. Free buffet breakfast and free WiFi in public areas are also provided. Additionally, dry cleaning, laundry facilities, and a 24-hour front desk are onsite. Weekly housekeeping is available. Toyoko Inn Tsushima Izuhara offers 245 accommodations with slippers and hair dryers. Flat-screen televisions come with pay movies. Bathrooms include shower/tub combinations, bidets, and complimentary toiletries. This Tsushima hotel provides complimentary wired and wireless Internet access. Business-friendly amenities include desks and phones. Housekeeping is offered weekly and irons/ironing boards can be requested. Housekeeping is provided on a limited basis.
Free Wi-Fi
8.5
Excellent
831 reviews
Location
0.3 km from city centre

Travel insights for hotels in Nagasaki Prefecture

Use these up-to-date, data-driven insights about booking a hotel in Nagasaki Prefecture including ideal times to book, pricing trends, and more.

What is the cheapest month to book a hotel in Nagasaki Prefecture?

The cheapest month to book a hotel in Nagasaki Prefecture is March (€17). Conversely, the most expensive month to stay in Nagasaki Prefecture is November (€153).

What is the cheapest day to stay in a hotel in Nagasaki Prefecture?

The cheapest day to stay in Nagasaki Prefecture is Sunday (€17). On the other hand, travelers can expect to pay the most on Thursday, when the average nightly price is €210.

How much is a hotel in Nagasaki Prefecture tonight?

Users have found prices for hotels in Nagasaki Prefecture tonight starting as low as €25, rising to an average cost of €95, based on searches in the last 72 hours. Prices start from €64 for a 4-star hotel in Nagasaki Prefecture for tonight.

How much is a Nagasaki Prefecture hotel room this weekend?

In the past 72 hours, we’ve seen prices for hotels in Nagasaki Prefecture this weekend for as little as €39/night. If you’re specifically looking for a 3-star hotel this weekend, our users have found prices as low as €39/night. For a 4-star hotel in Nagasaki Prefecture, the cheapest rate recently found was €63/night for this weekend.

How far ahead should you book a hotel in Nagasaki Prefecture?

Save money by booking a hotel at least 3 days before your trip to Nagasaki Prefecture. The lowest price found when booking 3 days ahead was €58 per night.

Top-rated Nagasaki Prefecture hotels

Browse through properties in Nagasaki Prefecture that have received the highest ratings from guests. There are currently 930 properties in Nagasaki Prefecture and data was last updated on 6 December 2025.
Our users rated these Nagasaki Prefecture hotels among the best places to stay. Skim through hotel descriptions and user reviews to find the right one for you.
567-1 Naganogo, Hasami, Japan
3.6 km from city centre
Free Wi-Fi
Parking
€40
Avg. per night
Huis Ten Bosch-Cho 6-5, Sasebo, Japan
13.7 km from city centre
Free Wi-Fi
Air conditioning
€69
Avg. per night
2520 Okubo-Cho, Hirado, Japan
0.6 km from city centre
Free Wi-Fi
Parking
€57
Avg. per night
320 Obamacho Unzen, Unzen, Japan
12.7 km from city centre
Free Wi-Fi
Parking
€210
Avg. per night
960, Aza Daranoki, Hitakatsu, Tsushima, Japan
52.5 km from city centre
Free Wi-Fi
Air conditioning
€49
Avg. per night
Imagawamachi 930, Shimabara, Japan
0.5 km from city centre
Free Wi-Fi
Air conditioning
€50
Avg. per night
760-1 Gonoura-Cho Honmurafure, Iki, Japan
0.5 km from city centre
Free Wi-Fi
Parking
Airport shuttle
€94
Avg. per night

Cheapest hotels in Nagasaki Prefecture, Japan

Discover affordable stays in Nagasaki Prefecture that provide a quality experience without breaking the bank. Hotels in Nagasaki Prefecture can be found for as low as €21 per night. There is currently one property in Nagasaki Prefecture that can be booked for this price. Tsudoi Guest House is one of the hotels that can be booked for the lowest price in Nagasaki Prefecture. Price data was last updated on 6 December 2025
These Nagasaki Prefecture properties charge the lowest price per night of those we've come across. As prices can vary by date, change the dates if you're flexible to compare rates.
323-2-2 Obama-Cho, Unzen, Japan
12.4 km from city centre
Free Wi-Fi
Air conditioning
€21
Avg. per night
Miuracho 6-32-302, Sasebo, Japan
3.6 km from city centre
Free Wi-Fi
€31
Avg. per night
3-2 Kamikyo-machi, Sasebo, Japan
3.1 km from city centre
Free Wi-Fi
€32
Avg. per night
2190-11 Motegi-Machi, Nagasaki, Japan
12.1 km from city centre
Free Wi-Fi
€32
Avg. per night
Matsuzatomachi 1538-1, Isahaya, Japan
8.0 km from city centre
Free Wi-Fi
Parking
€33
Avg. per night
3F, 6-1 Motofuna-Machi, Nagasaki, Japan
5.6 km from city centre
Free Wi-Fi
€33
Avg. per night
7-16, Dozamachi, Nagasaki, Japan
6.4 km from city centre
Free Wi-Fi
€33
Avg. per night
1-1Onoue, Nagasaki, Japan
5.2 km from city centre
Free Wi-Fi
Spa
€33
Avg. per night
1-20 Edo-Machi, Nagasaki, Japan
5.8 km from city centre
Free Wi-Fi
€35
Avg. per night
9-2 Motofuna-machi, Nagasaki, Japan
5.7 km from city centre
Free Wi-Fi
Spa
€35
Avg. per night
4-10 Chikugomachi, Nagasaki, Japan
5.5 km from city centre
€35
Avg. per night
8-8 Tokiwacho, Sasebo, Japan
2.6 km from city centre
Free Wi-Fi
€36
Avg. per night
9-2 Daikoku-Cho, Nagasaki, Japan
5.4 km from city centre
Free Wi-Fi
€36
Avg. per night
2-1 Daikoku-Machi, Nagasaki, Japan
5.2 km from city centre
Free Wi-Fi
€36
Avg. per night
6-38 Motoshikkuimachi, Nagasaki, Japan
6.6 km from city centre
Spa
€36
Avg. per night
9-24 Kagomachi, Nagasaki, Japan
6.5 km from city centre
Free Wi-Fi
€36
Avg. per night

Hotel prices in Nagasaki Prefecture

Get a sense of the average price and most popular properties to stay in Nagasaki Prefecture to help you budget for your trip accordingly. Hotels that are booked the most in each class receive the “Most popular” badge. Hotels with the “Best value” badge are the most popular hotels in Nagasaki Prefecture at attractive prices. Price data was last updated on 6 December 2025.
A breakdown of the average price per hotel class in Nagasaki Prefecture. As an added layer, we've also marked the most popular and best value properties in each hotel class.
3 stars
5-24 Minato-machi, Sasebo, Japan
Hama 4-11 Hamacross411 4F, Nagasaki, Japan
8-17 Shirahae-cho, Sasebo, Japan
3-2 Kamikyo-machi, Sasebo, Japan
2 stars and under
1453 Kokubu Izuharamachi, Tsushima, Japan
3F, 6-1 Motofuna-Machi, Nagasaki, Japan
7-16, Dozamachi, Nagasaki, Japan
960, Aza Daranoki, Hitakatsu, Tsushima, Japan
2190-11 Motegi-Machi, Nagasaki, Japan

Other accommodations in Nagasaki Prefecture

Find the perfect hostel, theme hotel, or holiday rental for your stay in Nagasaki Prefecture.
3F, 6-1 Motofuna-Machi, Nagasaki, Japan
5.6 km from city centre
Free Wi-Fi
€33
Avg. per night
11-2 Mezame-Machi, Nagasaki, Japan
4.0 km from city centre
Free Wi-Fi
Air conditioning
€46
Avg. per night
7-16, Dozamachi, Nagasaki, Japan
6.4 km from city centre
Free Wi-Fi
€33
Avg. per night

Where to stay in Nagasaki Prefecture

Explore different neighbourhoods and areas within Nagasaki Prefecture to find the perfect location for your stay. Map data was last updated on 6 December 2025.
Navigate to the areas in Nagasaki Prefecture you plan to visit to find hotels that are close by. Clicking on a hotel name will take you to a page with pricing, reviews, and more useful information.

Facts about staying in Nagasaki Prefecture

Find useful tips and insights about staying in Nagasaki Prefecture to help you make the most of your experience. FAQs were last updated on 6 December 2025.
  • Where is the best place to stay in Nagasaki Prefecture?

    When visiting Nagasaki Prefecture, consider checking out Nagasaki, Goto, and Sasebo as some of the most sought after locations.

  • What are the best hotels in Nagasaki Prefecture?

    935 reviews rated Casa Blanca Guesthouse with an average score of 8.5/10. It may also be worth looking into the Hotel Nikko Huis Ten Bosch, which received a rating of 8.5/10 from 2,684 reviews. Restay Nagasaki Aine (Adult Only) could also be a good option, with a score of 7.3/10 from 51 reviews.

  • What is a good hotel near Huis Ten Bosch?

    Hotel Nikko Huis Ten Bosch is a good hotel close to Huis Ten Bosch - it has scored 8.5 over 2,684 reviews from HotelsCombined users.

  • What is a good hotel in Nagasaki Prefecture near Nagasaki Railway Station?

    The most popular hotel near Nagasaki Railway Station is Candeo Hotels Nagasaki Shinchi Chinatown, with 3,529 HotelsCombined users scoring it 8.7/10.

  • Is there a good hotel near Urakami Station?

    Close to Urakami Station you will find Jr Kyushu Hotel Nagasaki, which has a rating of 8.6 over 3,210 HotelsCombined reviews.

  • What is the cheapest city to visit in Nagasaki Prefecture?

    Tsushima and Nagasaki are the top two cheapest cities to stay in Nagasaki Prefecture. It costs €81 per night on average to stay in Tsushima, and around €110 per night in Nagasaki.

  • What is the most popular city in Nagasaki Prefecture to stay in?

    The most popular city in Nagasaki Prefecture to stay in is Nagasaki, followed by Goto and Sasebo. This is based on how many users searched for a place to stay in these areas.

  • What are the most popular landmarks to visit in Nagasaki Prefecture?

    Huis Ten Bosch, Nagasaki Railway Station, and Urakami Station are the most popular landmarks in Nagasaki Prefecture according to our data. You can experience Huis Ten Bosch if you plan to visit Sasebo. You can visit Nagasaki Railway Station if you stay in Nagasaki. Urakami Station is accessible while staying in Nagasaki.

See more FAQs

Find better results for your stay in Nagasaki Prefecture